"I made a clone (as opposed to an image)"
A clone is a bootable exact copy of the original C:\
A clone is made to replace the original C:\
You open up the drive bay and take the original C:\ out (and put it in your cupboard to keep it safe) and then you put your clone in the hard drive bay.
The clone is now the C:\ drive.
....If you did not want a clone, I suggest you start again.